Available Functions for rBCBG

Data Loading and Processing

Available functions:

• Parameters for rBCBG model and simulation
  • SignalAnalysisParams
  • SimulationParams
  • bin_size_by_rule()
• Loader class for rBCBG results (in respective files)
  • CommonLoader
    • CommonLoader.get_region_name()
  • LoadRates
    • LoadRates.extract_modelID()
    • LoadRates.extract_nucleus_name()
    • LoadRates.extract_percentage()
    • LoadRates.get_mean_rates()
    • LoadRates.get_rates()
• Curate class for processing rBCBG results (in respective files)
  • Use Cases
    • 1. Pre-requisites
      • 1.1. Import Modules
      • 1.2. Load file and get the firing rates
    • 2. Cases
      • 2.1. Filter rates for a desired window
      • 2.2. Preprocess the rates
  • apply_highpass_filter()
  • detrend_rates()
  • filter_rates()
  • preprocess()
  • zscore_normalize()

Statistics

Available statistical functions:

• Power Spectrum of rBCBG firing rates
  • PowerSpectrum
    • PowerSpectrum.compute_for_rate()
    • PowerSpectrum.compute_spectrogram()
    • PowerSpectrum.compute_stft()

Visualizers

Available visualization functions:

• Visualize Rate Statistics of rBCBG firing rates
  • Plot Mean Rate
    • 1. Pre-requisites
      • 1.1. Import Modules
      • 1.2. Load file and get firing rates
    • 2. Cases
      • 2.1. Visualize All Firing Rates with default setting
      • 2.2. Visualize All Firing Rates within a desired window
      • 2.3. Visualize Mean Firing rate
  • plot_mean_rate_in_ax()
  • plot_rate_all_neurons_in_ax()
• Power Spectral Density Plots of rBCBG firing rates
  • VizPSD
    • VizPSD.plot_global_in_ax()
    • VizPSD.plot_tv_in_axis()